PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.009G078100.1
Common NameB456_009G078100
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 293aa    MW: 33184.4 Da    PI: 8.4312
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.009G078100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.20.000563254123
                        EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                        + C +Cgk F ++  +  H+r H
  Gorai.009G078100.1 32 FFCRYCGKGFMSNKAMAGHLRIH 54
                        67*******************98 PP

2zf-C2H213.10.0002982104123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         ++C  C++sFs+  +L +H + H
  Gorai.009G078100.1  82 FSCLVCTESFSSMKLLCQHTNIH 104
                         89******************997 PP

3zf-C2H212.80.00037217237121
                         EEETTTTEEESSHHHHHHHHH CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHir 21 
                         ++C++Cgk+F +   L  H  
  Gorai.009G078100.1 217 HQCEICGKTFETGQALGGHKT 237
                         79********99888877765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.16E-53059No hitNo description
SMARTSM003550.0153254IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.5083259IPR007087Zinc finger, C2H2
PfamPF139120.0623454IPR007087Zinc finger, C2H2
PROSITE patternPS0002803456IPR007087Zinc finger, C2H2
SuperFamilySSF576674.84E-781104No hitNo description
SMARTSM003550.9282104IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.99582109IPR007087Zinc finger, C2H2
PROSITE patternPS00028084106IPR007087Zinc finger, C2H2
SuperFamilySSF576674.84E-7212239No hitNo description
SMARTSM003550.1217239IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.637217244IPR007087Zinc finger, C2H2
PfamPF139122.2E-9217240IPR007087Zinc finger, C2H2
PROSITE patternPS000280219239IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MVPADSCSLP FLGGKYLKTQ HAETPHDSRN SFFCRYCGKG FMSNKAMAGH LRIHSHHHPT  60
SKTELQQQQQ EDDDDDDDDD FFSCLVCTES FSSMKLLCQH TNIHRHMDSS QESNISSSGA  120
DTIVKQGNGP HTIDLLKDFN FKWSRTGKRG SNRITSQDAQ PLKLRVRPPH METRKNKKMK  180
TEDTSMEFEL GGTKSESGVD PCHARRSRKN KAVKSEHQCE ICGKTFETGQ ALGGHKTYHR  240
VKKNKVELLQ QGKTKQEPCM MTPMLLPHLS QQPDPSHPKT MLDFDLNIPY QQ*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGQ3949241e-126GQ394924.1 Gossypium hirsutum cultivar Delta Opal clone MONCS1947 SSR marker DPL0266 genomic sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0D2RW780.0A0A0D2RW78_G
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1835248
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G29340.12e-08C2H2 family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]